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Pro/Seminar Bioinformatik:

Protein Structure Prediction

Winter Term 04/05


Lecturer: Prof. Dr. Volkhard Helms, Wei Gu, Yungki Park

Time: Thursday, Nov. 11 (9:00 am), Nov. 25, Dec. 9, Jan. 13, Jan. 27 (all 8:30 am) building 45, room 016

First Meeting: Friday, October 29, 2004, 4 pm, Building 46 (MPI), R. 021

Extra Meeting: Tuesday, December 21, 2004, 10:15 am, Building 17.1, R. 1.08, Bettina Leonhardt: Prediction of Protein-Protein Docking

Language: English

Requirements: Bioinformatics II is recommended

Leistungspunkte/Credits: 9

Projects for Student Presentations:

  1. Protein 3D structure prediction - Rosetta
  1. Protein 3D structure prediction – Distance geometry
  1. Protein 3D structure prediction – Threading
  1. SCWRL (side chain conformation prediction)
  1. Prediction of GPCR structures
  1. Prediction of protein-protein docking
  1. Neural network-based approach for protein structure prediction
  1. Protein secondary structure prediction
  1. Protein threading
  1. A hierarchical approach to all-atom protein loop structure prediction
  1. Pka calculation/ Prediction of the protonation state
  1. Combining NMR data with ab initio protein 3D structure prediction
  1. Skolnick’s constraint-based MC method for protein 3D structure prediction