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Vesiweb: Dynamic simulations of a chromatophore vesicle from Rhodobacter sphaeroides

With vesiweb you can control vesimulus, the tool for stochastic molecular simulation of chromatophore vesicles from Rhodobacter sphaeroides. This web frontend allows you to edit the parameters for the simulation, i.e., the numbers of the corresponding proteins, the reaction rates and the initial number of metabolite particles. After the simulation is finished, you can analyze the outcome of your simulations.


ABC2-Database Database for analysing biomolecular contacts.


eDrugSCAN


TMX: Transmembrane eXposure prediction server
(service to predict the burial status of Alpha helical transmembrane residues)

MINS (Service to predict membrane insertion free energies of helical transmembrane sequences)


Software


Topoview

Brownmove, a many-particle Brownian Dynamics simulation package 

Vesimulus - Molecular stochastic simulations not only of bacterial photosynthesis

Parameter for Q-HOP MD

 

movie 1 (20Mb)

movie 2 (40 Mb)

movie 3 (90 Mb)

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