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Special-topic Lecture Bioinformatics: Dynamic Cell Simulations

General Information

Lecturer: Dr. Tihamér Geyer

Tutor: Mazen Ahmad

Time: Monday, 2:15 pm - 3:45 pm, building E1 3, SR 0.14
Tutorial: Friday, 8:30 am - 10:00 am, building E2 4, room 10 (012)

Requirements: this course aims at master students in Bioinformatics or Physics.

Condition for certification:  Grade of certification ("Schein") is based on the final exam.

Condition for the participation in the final exam: at least half of the points of the assignments.

Date of the exam: Monday, July 14, 2:00 pm, building E1 1, room 407.

Leistungspunkte/Credit points: 5 (V2/Ü1)

This course is taught in English language.

Contents: This course will cover the dynamic modelling of biological systems, starting from simple chemical reactions up to simulations at molecular resolution. The emphasis is hereby put on the specific problems encountered in a realistic modelling within the complex biological environments. The topics include:

  • how to set up an appropriate model/description
  • continuous vs. stochastic vs. single-molecule descriptions
  • transport processes
  • numerical integration techniques
  • multi-scale approaches

 

Lecture 1, April 14 pdf  
Lecture 2, April 21 pdf  
Lecture 3, April 28 pdf  Assignment 1    Supplement 1 
Lecture 4, May 5 pdf   
Lecture 5, May 19 pdf  Assignment 2 
Lecture 6, May 26 pdf   
Lecture 7, June 2 pdf  
Lecture 8, June 9 pdf Assignment 3 
Lecture 9, June 16 pdf  Assignment 4 
Lecture 10, June 23 pdf   
Lecture 11, June 30 pdf   
Lecture 12, July 7 pdf   

 

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